rs33861426 SNP Detail

Summary

• ID
  rs33861426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCTACAATG GGGAGGCCAA GAAAGCAGCC CAAGATTTGT CCTGTGACTT ACAAGGACAG
  AGTATCTATC ACTTGATATC CACTTAGCAC TGTATGGCTA GGTTACTCCC CACTTCCCAT
  TCACCGGGTC CTAAGCGTCT CCTGAAACAG GGTAAGATAA AGACAGTTGC TCTGTGCAGA
  GAGGGACTGG GGAGTAATGA GCTGGAGCTG AGTACCACGG GCAAAGGCTA AAGGCAGGCC
  TGTTCCTCTG GACAAGCCTG CATGAAGTGT CATGGTTCCT AACACTCTGA GTGAAGCTCT
  Y
  AGGAAAGGCT CTGCCTCACT CAGCCCAGAG AGGATGAGAC CCAGGCAGTA CGGTCCCTGC
  TCCACGTTTC CAGTGCTCTG CTCTCCGGCC TCTTCCTGAA GAAGCCTGGC TTGAGGAGGT
  AGCAGCCACA CCTGGTTATA GCAGCAGATC TACCAACAGG CCTCACCAGA CATCTCCAGA
  GGCCACAGGC AGTTCTAAGT TATTACAAAT AGCCTGGCCA TGGCATAAAT GAATGCTGTT
  TGTGCCAGCC AGGGTGGTGC ACATCTGGGG TTCCAACACC CACAAGGCCG AGGGAAAAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45472668	mCV24028197	ABI	CRAMUS_MOUSE	f	SNP		C	T				C		C
ss51060152	NES13425295	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C		C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33861426					SNP	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060152	NES13425295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994013 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587515	regulatory region 587515	322 bp distal
Rr587516	regulatory region 587516	466 bp proximal
Tssr32405	transcription start site region 32405	1950 bp upstream