rs33861539 SNP Detail

Summary

• ID
  rs33861539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104467340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGTCAAAGG GGACTTTTGA TTGTTAGACT TCAATACTTT GATAGCTGGA CCTTGGTGGT
  CAGCCTCAGA GGAAGGAAGA GAATAGACCT TGATGGCTAG CCTTAGGAAT ACAGTATAAG
  GGTTTTTAGC AAGGAAGAAG GAATGGGGAA AGGGCAAGGC CTGCCAGAGT CATGTTTGCC
  ATGCTCAGCC AGCTAGAATC CCTTCGGTAT TGTCAAAAGA GAAGCTTTGT TAAAAAAAAA
  AAAGAAAGAA GAAGGAGGAG GAGGAGGAGG AAGAGGAGGA GGAGGAAGAG GAGGAGGAGA
  R
  AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAAGGGAAA AGAAAAGAAA AGAAAAGAAA
  AGAAAAGAAA AGAAAAGAAA GGATATATAT TTAATCTTCA TGGGTGTGTT ACCTAGACTT
  GTTACTTTCA AGACTGTTGT CTTGAAAAAG GGAGACTCTG AGGTCAGGTG TGGTGGACCA
  AGCCGGCACT GGCAAGGCAG AGGCAGAAGG ATCTTTGTTA GTCCAGGATC TATGTGCTCC
  AGGACAACCA GGACTACATT AGAGACCTTG TCTCAAACAA CAGCAAAAAG AAACACCACC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45472602	mCV22703877	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs33861539					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104467340 () rs orientation: forward

Symbol	Name	Function Class
Rr582541	regulatory region 582541	1578 bp proximal