rs33861550 SNP Detail

Summary

• ID
  rs33861550
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130369904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTAAGCTC AGTCTTCCTG ACATATATTT GAAGTCCTTA
  CCTCATTTTT TAAGACTCTA AATCTGAAAA TTTTTCAGTT CTAAGAATCA TCAAGCAGGG
  K
  TTTTTTTTCC CCTCCAGACC CCAGAGTTCT TACATTCTTT CGTGTGTTAT TTTATCTGCC
  ACAGAAACCA ATTATGCTTG CAAGCTGTAG GGAGAGCCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45467872	mCV24294404	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss135896433	ENSMUSSNP2981226	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33861550					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130369904 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	776 bp distal
Rr585176	regulatory region 585176	1292 bp distal
Rr585177	regulatory region 585177	539 bp proximal
Rr585178	regulatory region 585178	628 bp proximal