rs33862266 SNP Detail

Summary

• ID
  rs33862266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78870476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCTGTGT GAGCAAGATT
  ACGGAAAACA GGCATCCTCA CACATTACAA GAGGCAGTTA AGTCAGTGTG ATTCCTATGA
  CAGCTAATTT TTAAATATAT ATATATATCA AGATTTTAAA TCACAGCCCT GTCAGCTATC
  AAGTCTATTT ATAACTTATC TGGAGATACA TTCACTAGCA AGAATAGGCT AACACGCACG
  R
  AAGCATGGTT TGTAACAATA AAAAATTAGT ATAATCACTG CATTAATGAG CAGGACCCTG
  GCTAGGGGAG TGTGATGGCC ATTCTTGGTT GTCAAGCTGA CTACATGTAC AATACATGTG
  AAAACCAAGT GCCTGGGCAC ACCTGTGAGG GATTTTTCTT AATTAAATTA TTTGAGGTAG
  GAAGACACCC CTTTAATCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45497978	mCV24563852	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G
ss60421450	NES15922997	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33862266					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421450	NES15922997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78870476 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Rr578452	regulatory region 578452	1227 bp proximal