rs33862947 SNP Detail

Summary

• ID
  rs33862947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136378454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCAAAGAT ACTTTGTTTC CTAAACAAAG TAATAGTTTA
  CAAAGATGAT ACTATGTGTT GGTAGAAAAA AAAGTCCTGT CACATTCCCT GTTTAGATGT
  Y
  AAACGTGGAT TTCTAAAGTG TGGATTTAGA TTGTTATTGT CATCAAGTAA GCTATGTAAA
  ACTAATTGCT TGATATGTTT ACCAGTTAAT AAGCAGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45560772	mCV25269105	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss135936920	ENSMUSSNP1814795	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320974486	CHEV_3_136335657	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33862947					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136378454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	304 bp distal
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398057	regulatory region 398057	1591 bp downstream
Rr585837	regulatory region 585837	1913 bp distal
Rr585838	regulatory region 585838	190 bp distal
Rr585839	regulatory region 585839	1425 bp proximal
Rr585840	regulatory region 585840	1840 bp proximal
Tssr31874	transcription start site region 31874	1965 bp downstream
Tssr31875	transcription start site region 31875	1869 bp downstream
Tssr31876	transcription start site region 31876	1819 bp downstream
Tssr31877	transcription start site region 31877	403 bp upstream