rs33863734 SNP Detail

Summary

• ID
  rs33863734
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16188624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG GGGATTCTAG GCAGGGGCTC
  K
  ACCACTGAAC TACATCACCA GCCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46124686	mCV22944386	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	T
ss148386801	ENSMUSSNP5249850	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
ss322110720	CHEV_7_17040048	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33863734					SNP	T	T	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16188624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	1162 bp distal
Cpgi18378	CpG island 18378	310 bp proximal
Npas1	neuronal PAS domain protein 1	1019 bp downstream
Rr400123	regulatory region 400123	1781 bp downstream
Rr642667	regulatory region 642667	1910 bp distal
Tmem160	transmembrane protein 160	within coordinates
Tssr64613	transcription start site region 64613	1731 bp downstream
Tssr64614	transcription start site region 64614	1668 bp downstream