rs33864000 SNP Detail

Summary

• ID
  rs33864000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19191894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGTCCCA CCAAGGGGAC
  CCCAGAGGCG ACTAGGATCC AAGGACAGGG CAACCTGGCA CAGCAGGGTC AGGCCAGGGA
  GTGGAGACAC CTTGAAGGAA GCGGGCAGGG CCCTGCGCCC AGGTGCCGTT TGGCTTCCTG
  GGGGAGGCAG CTAGCAGGAG CCCAGGCGGA GCTGGGGACT GGCCAGGGGT AGCAGGGGAA
  R
  CCAGCACCCC AACTCGGCAA GAAGCAGGGA GGACAACAGG GCCAGACTGG GTCGAGCCTT
  GAGGGGGGAG GGGGGAGACA GGGCTGCGCT TCGGGGAACA GGGGCCCGTG CCATCCGGGA
  AGAGTCGAGG CCAAGCTGCG GGCGAGCGGG CGAGCGGGGG ACAGCCGGGG CAGCCGAGGA
  AGGGAGGGGC TGCCGGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46040602	mCV22659349	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148476714	ENSMUSSNP170904	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33864000					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19191894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	within coordinates
Mark4	MAP/microtubule affinity regulating kinase 4	within coordinates
Rr400149	regulatory region 400149	787 bp upstream
Rr643146	regulatory region 643146	within coordinates
Rr643147	regulatory region 643147	842 bp proximal
Tssr64858	transcription start site region 64858	961 bp upstream
Tssr70918	transcription start site region 70918	703 bp downstream
Tssr70919	transcription start site region 70919	759 bp downstream
Tssr70920	transcription start site region 70920	779 bp downstream
Tssr70921	transcription start site region 70921	810 bp downstream
Tssr70922	transcription start site region 70922	832 bp downstream
Tssr70923	transcription start site region 70923	1266 bp downstream