rs33864250 SNP Detail

Summary

• ID
  rs33864250
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027499 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GAATATGGCA AGAAAACTGA AAATCATAGA AAATGAGAAA CATCCACTTG ACGACTTGAA
  AAATGACGAA ATATCTAAAA AACGTGAAAA ATGAGAAATG CACACTGAAG GACCTGTAAT
  ATGGCGATAA AACTGAAAAT CACGGAAAAT GAGAAATACA CACTTTAGGA CGTGAAATAT
  GGCGAGGAAA ACTGAAAAGG GTGGAAAATT TAGAAATGAC CACTGTAGGA CGTGGAAAAA
  GGCAAGAAAA CTGAAAATCA TTGAAAATGA GAAACATCCA CTAGAGGACT TGAAAAATGA
  M
  GAAATCCCTA AAAAACTTGA AAAATGAGAA ATGCACACTG AAGGACCTGG AATATGGCGA
  GAAAACTGAA AATCACGGAA AATGAGAAAT ACACACTTTG GGACGTGAAA TATGGCGAGG
  AAAACTGAAA AAGCTGGAAA ATTTATAAAT GTCCACTGTA GGACGTCGAA TATGGCAAGA
  AAACTGAAAA TCATGGAAAA TGAGAAACAT CCACTTGACG ACTTGAAAAA TGACGAAATC
  ACTAAAAAAC GTGAAAAATG GGAAGTGCAC ACTGAAGGAC CTGGAATATG GCGAGAAAAC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss46418683	mCV22728093	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs33864250					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027499 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1591 bp distal
Cpgi21324	CpG island 21324	319 bp distal
Cpgi21325	CpG island 21325	1888 bp proximal
Rr673606	regulatory region 673606	969 bp distal
Rr673607	regulatory region 673607	489 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	382 bp proximal
Rr673610	regulatory region 673610	1382 bp proximal
Tssr83579	transcription start site region 83579	1967 bp downstream
Tssr83580	transcription start site region 83580	1871 bp downstream
Tssr83581	transcription start site region 83581	1626 bp downstream
Tssr83582	transcription start site region 83582	1004 bp downstream
Tssr83583	transcription start site region 83583	817 bp downstream
Tssr83584	transcription start site region 83584	730 bp downstream
Tssr83585	transcription start site region 83585	354 bp downstream
Tssr83586	transcription start site region 83586	31 bp downstream
Tssr83587	transcription start site region 83587	256 bp upstream
Tssr83588	transcription start site region 83588	1872 bp upstream
Tssr88018	transcription start site region 88018	1941 bp upstream
Tssr88019	transcription start site region 88019	779 bp upstream
Tssr88020	transcription start site region 88020	711 bp upstream
Tssr88021	transcription start site region 88021	87 bp upstream
Tssr88022	transcription start site region 88022	11 bp upstream
Tssr88023	transcription start site region 88023	1903 bp downstream