rs33864770 SNP Detail

Summary

• ID
  rs33864770
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3038160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCTACACTG GACATTTCTA AATTTTCCAC CTCTTTCAGT TTTCTTCGCC ATATTTCACG
  TCCTAAAGTG TGTATTTCTC ATTTTCCGTG ATTTTCAATT TGCTCTCCAT ATTCCAGGTC
  CTTCAGTGTG CATTTCTCAT TTTTCATGTT TTTTAGTGAT TTCGTCATTT TTCAAGTCGT
  CAAGTGGATG TTTCTCATTT TCCATGATTT TCAGTTTTCT TGCCATATTC CACGTCCTAC
  AGAGGACATT TCTAAATTTT CCACATTTTT CAGTTTTCCT TGCCATATTT CACGTCCTAA
  M
  GTGTGTATTT CTCATTTTCT GTGATTTTCA GTTTTCTCGC CACATTCCAG GTCCTTCAGT
  GTGCATTGCT CATTTTTCAC GTTTTCTACT GATTTCGTCA TTTTTCAAAC GTCAAGTGGA
  TGTTTCTCAT ATTCCATGAT TTTCAGTTTT CTAGCCATAT TCCAAGTCCT ACAGTGGACA
  TTTCTAAATT TTCAACCTTT TTCAGTTTTC CTCGCCATAT TTCCTGTCCT AAAGTGTGTA
  TTTCTCATTT TCCGAGATTT TCAGTTTTCT TGCCATATTC CAGGTTCTCA GTGTGCATTT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss46427121	mCV25339878	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs33864770					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3038160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1571 bp distal
Cpgi21329	CpG island 21329	within coordinates
Mir101c	microRNA 101c	509 bp downstream
Rr673616	regulatory region 673616	910 bp distal
Rr673617	regulatory region 673617	250 bp distal
Rr673618	regulatory region 673618	141 bp proximal
Tssr83601	transcription start site region 83601	1817 bp downstream
Tssr83602	transcription start site region 83602	1773 bp downstream
Tssr83603	transcription start site region 83603	1759 bp downstream
Tssr83604	transcription start site region 83604	805 bp downstream
Tssr83605	transcription start site region 83605	126 bp downstream
Tssr83606	transcription start site region 83606	22 bp upstream
Tssr88027	transcription start site region 88027	1787 bp upstream
Tssr88028	transcription start site region 88028	1763 bp upstream
Tssr88029	transcription start site region 88029	90 bp upstream
Tssr88030	transcription start site region 88030	23 bp downstream