rs33865133 SNP Detail

Summary

• ID
  rs33865133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69556575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA TTCCCATGAC TGGTGGTGGT
  R
  GCAGGGTTAT GAGTGACAGT TGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46437434	mCV25183272	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss323730977	CHEV_11_69479251	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33865133					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69556575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd68	CD68 antigen			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Eif4a1	eukaryotic translation initiation factor 4A1			1187 bp downstream
Gm73992	predicted gene, 73992			within coordinates
Rr450060	regulatory region 450060			1570 bp distal
Rr450061	regulatory region 450061			303 bp proximal
Tssr102508	transcription start site region 102508			1565 bp downstream
Tssr102509	transcription start site region 102509			1530 bp downstream
Tssr102510	transcription start site region 102510			1396 bp downstream
Tssr102511	transcription start site region 102511			1361 bp downstream
Tssr102512	transcription start site region 102512			113 bp downstream
Tssr102513	transcription start site region 102513			75 bp downstream
Tssr102514	transcription start site region 102514			45 bp downstream
Tssr102515	transcription start site region 102515			within coordinates
Tssr102516	transcription start site region 102516			723 bp upstream
Tssr102517	transcription start site region 102517			753 bp upstream
Tssr108748	transcription start site region 108748			1367 bp upstream
Tssr108749	transcription start site region 108749			1290 bp upstream
Tssr108750	transcription start site region 108750			1261 bp upstream
Tssr108751	transcription start site region 108751			1232 bp upstream
Tssr108752	transcription start site region 108752			819 bp upstream
Tssr108753	transcription start site region 108753			629 bp upstream
Tssr108754	transcription start site region 108754			429 bp upstream
Tssr108755	transcription start site region 108755			384 bp upstream
Tssr108756	transcription start site region 108756			354 bp upstream
Tssr108757	transcription start site region 108757			163 bp upstream
Tssr108758	transcription start site region 108758			69 bp downstream
Tssr108759	transcription start site region 108759			87 bp downstream
Tssr108760	transcription start site region 108760			143 bp downstream
Tssr108761	transcription start site region 108761			316 bp downstream
Tssr108762	transcription start site region 108762			329 bp downstream
Tssr108763	transcription start site region 108763			413 bp downstream
Tssr108764	transcription start site region 108764			1476 bp downstream
Tssr108765	transcription start site region 108765			1621 bp downstream