rs33865452 SNP Detail

Summary

• ID
  rs33865452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127540775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG ATATAAGCAC TGGAGCAAGG
  R
  GCCAGAGAGA GCGCCCCCCT CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46441104	mCV22734969	ABI	CRAMUS_MOUSE	f	SNP		G						G		A
ss50947147	NES14150426	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		A	A	A	A	A	A	A	G
ss147734691	ENSMUSSNP6495687	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33865452					SNP	G	G	G	G	G	A	G	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947147	NES14150426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127540775 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	264 bp upstream
Rr213603	regulatory region 213603	within coordinates
Rr221966	regulatory region 221966	1670 bp proximal
Tssr3395	transcription start site region 3395	375 bp upstream
Tssr96244	transcription start site region 96244	1389 bp downstream
Tssr96245	transcription start site region 96245	1354 bp downstream
Tssr96246	transcription start site region 96246	1888 bp upstream
Tssr96247	transcription start site region 96247	1906 bp upstream