rs33866315 SNP Detail

Summary

• ID
  rs33866315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTTCTCATT TTTCACGTTT TTCAGTGATT TGGTCATTTT TCAAGTCGTC ACGTGGATGT
  TTCTTATTTT CCATGATTTT CAGTTTTCTG GCCATATTCC ATGTCCTACA GCGGAGATTT
  CTAAATTTTC CAATTTTTTC AGTTTTCCTT GTCATATTTC ACGTCCTAAA GTGTGTATTT
  CTCATTTTCC TTGATTTTCA GTTTTCTCGC CATATTCCAG GTCCTACAGT GTGCATTTCT
  CATTTTTCAC GTTTTTCAGT GATTTCGTCA TTTTTCAAGT GGTCAAGTGG TTGTTTCTCA
  K
  TTTCCATGAT TTACAGTTTT CTTGCCATAT TCCATTTCCT ACAGTGGACA TTTCTAAATT
  TTCCACCTTT TTCAGTTTTC CTCGCCATAT TTCACGTCCT AAAGTGTGTA TTTCTCATTT
  TTCGTTATTT TCAGTTTTCT CGCCATATTC CAGATCCTAC AGTGTGCATT TCTCGTTTTT
  CACGTTTTTC AGTGATTTCG TCATTTTTTA AGTCGTCAAG TGAATGTTTC TCATTTTTCA
  TGATTTTCAG TTTTCTTGCC ATATTCAATG TCCTACAGCG GGACATTTCT AAATTTCCCA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46460156	mCV23016383	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33866315					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1625 bp distal
Cpgi21324	CpG island 21324	353 bp distal
Cpgi21325	CpG island 21325	1854 bp proximal
Rr673606	regulatory region 673606	1003 bp distal
Rr673607	regulatory region 673607	523 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	348 bp proximal
Rr673610	regulatory region 673610	1348 bp proximal
Tssr83580	transcription start site region 83580	1905 bp downstream
Tssr83581	transcription start site region 83581	1660 bp downstream
Tssr83582	transcription start site region 83582	1038 bp downstream
Tssr83583	transcription start site region 83583	851 bp downstream
Tssr83584	transcription start site region 83584	764 bp downstream
Tssr83585	transcription start site region 83585	388 bp downstream
Tssr83586	transcription start site region 83586	65 bp downstream
Tssr83587	transcription start site region 83587	222 bp upstream
Tssr83588	transcription start site region 83588	1838 bp upstream
Tssr88018	transcription start site region 88018	1975 bp upstream
Tssr88019	transcription start site region 88019	813 bp upstream
Tssr88020	transcription start site region 88020	745 bp upstream
Tssr88021	transcription start site region 88021	121 bp upstream
Tssr88022	transcription start site region 88022	45 bp upstream
Tssr88023	transcription start site region 88023	1869 bp downstream