rs33866485 SNP Detail

Summary

• ID
  rs33866485
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050469 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CATATTTCAC GTCCTAAAGT GTGTATTTCT CATTTTCCGT GATTTTCAGT TTTCTCAACA
  TATTCCAGGT CCTACAGTTT GCATTTCTCA TTTTTCTCGT TTTTCAGTGA TTTCGTCATT
  TTTCAAGTCG TCAAGTGGAT GTTTCTCATT TTCCATGATT TTCAGTTTTC TTGCCATATT
  CCATGTCCTA CAGTGGATAT TTCTAAATTT TCCACCTTTT TCAGTTTTCC TCTCCATATT
  TCACGTCCTA AAATGTGTAT TTCTCATTTT CAGTGATTTT CAGTTTCCTC GCCATATTCC
  M
  GGTCCTACAG TGTGCATTTC TCACTTTCCA CGTTTTTCAG TGATTTCGTC ATTTTTCAAG
  TCGTCAAGTT GATGTTTCTC ATTTTCCATG ATTTTCAGTT TTCTTGCCAT ATTCCATGTC
  CTACAGTGGA TATTTCTAAA TTTTCCACCT TTTTCAGTTT TCCTCTCCAT ATTTCACGTC
  CTAAAATGTG TATTTCTCAT TTTCAGTGAT TTTCAGTTTT CTCGCCATAT TCCAGGTCCT
  ACATTGTGCA TTTCTCACTT TCCACGTTTT TCAGTGATTT CGTCATTTTT CAAGTCGTCA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46460977	mCV25367572	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs33866485					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050469 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1857 bp downstream
Tssr4285	transcription start site region 4285	1832 bp upstream
Tssr4286	transcription start site region 4286	1728 bp downstream
Tssr4287	transcription start site region 4287	1693 bp upstream
Tssr4288	transcription start site region 4288	1665 bp downstream
Tssr4289	transcription start site region 4289	1570 bp upstream
Tssr4290	transcription start site region 4290	1563 bp downstream
Tssr4291	transcription start site region 4291	1483 bp upstream
Tssr4292	transcription start site region 4292	1447 bp downstream
Tssr4293	transcription start site region 4293	1412 bp upstream
Tssr4294	transcription start site region 4294	1410 bp downstream
Tssr4295	transcription start site region 4295	1337 bp upstream
Tssr4296	transcription start site region 4296	1374 bp downstream
Tssr4297	transcription start site region 4297	1310 bp upstream
Tssr4298	transcription start site region 4298	1292 bp downstream
Tssr4299	transcription start site region 4299	1252 bp downstream
Tssr4300	transcription start site region 4300	1214 bp downstream
Tssr4301	transcription start site region 4301	1196 bp upstream
Tssr4302	transcription start site region 4302	1184 bp upstream
Tssr4303	transcription start site region 4303	1129 bp downstream
Tssr4304	transcription start site region 4304	1100 bp upstream
Tssr4305	transcription start site region 4305	1031 bp downstream
Tssr4306	transcription start site region 4306	1012 bp upstream
Tssr4307	transcription start site region 4307	991 bp downstream
Tssr4308	transcription start site region 4308	959 bp upstream
Tssr4309	transcription start site region 4309	915 bp upstream
Tssr4310	transcription start site region 4310	868 bp downstream
Tssr4311	transcription start site region 4311	840 bp upstream
Tssr4312	transcription start site region 4312	760 bp downstream
Tssr4313	transcription start site region 4313	701 bp upstream
Tssr4314	transcription start site region 4314	689 bp downstream
Tssr4315	transcription start site region 4315	665 bp downstream
Tssr4316	transcription start site region 4316	638 bp upstream
Tssr4317	transcription start site region 4317	562 bp downstream
Tssr4318	transcription start site region 4318	538 bp upstream
Tssr4319	transcription start site region 4319	481 bp upstream
Tssr4320	transcription start site region 4320	417 bp downstream
Tssr4321	transcription start site region 4321	389 bp upstream
Tssr4322	transcription start site region 4322	290 bp downstream
Tssr4323	transcription start site region 4323	255 bp upstream
Tssr4324	transcription start site region 4324	225 bp downstream
Tssr4325	transcription start site region 4325	174 bp downstream
Tssr4326	transcription start site region 4326	136 bp upstream
Tssr4327	transcription start site region 4327	133 bp downstream
Tssr4328	transcription start site region 4328	51 bp downstream
Tssr4329	transcription start site region 4329	53 bp upstream
Tssr4330	transcription start site region 4330	50 bp upstream
Tssr4331	transcription start site region 4331	74 bp downstream
Tssr4332	transcription start site region 4332	180 bp downstream
Tssr4333	transcription start site region 4333	192 bp upstream
Tssr4334	transcription start site region 4334	214 bp downstream
Tssr4335	transcription start site region 4335	361 bp downstream
Tssr4336	transcription start site region 4336	365 bp upstream
Tssr4337	transcription start site region 4337	438 bp downstream