rs33866803 SNP Detail

Summary

• ID
  rs33866803
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3035930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCATATTCCA GGTCCTAGAG TGTGCATTTC TCATTTTTCA CGTTTTTCAG TGATTTCGTT
  ATTTTACAAG TCGTCAAGTG GATGTTTCTC ATTTTCCATG AATTTTAGTT ATCTTGACAT
  ATTCCACATC CTACAGTGGA CATTTCAAAA TTTTCCACCT TCTTCAGTTT TCCTCGCCAT
  AATTCACGTC CTAAAGTGTG TATTACTTAT TTTCCGAGAT TTTCAGTTTC CTCGCCATAT
  TCCAAGTCCT ACAGTGTGCA TTTCTCATTT TTCACGGTTT CCAGTGATTT CGTCATTTTT
  M
  AAATCGTTAG GTGGATGTTT CTCATTTTCC ATGATTTTCA GTTTTCTTGC CATATTCCAC
  GTCCTACAGT GGACATTTCT AAATTTTCGA CCTTTTTCAT TTTTCCGCGC CATATTTCAC
  GTCCTAAAGT GTGTTTTTCT CATTTTCCGT GATTTTCAGT TTTCTCTCCA TATTACAGGT
  CCTTCAGTGT TCATTTCTCA TTTTTCACGT TTTTCAGTGA TTTTTTCATT TTTCAAGTCG
  TCAAGTGGAA ATTTCTCATT TTCCATGATT TTCAGTTTTT TCCATATTCC ACGTCCTACT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46470874	mCV22985277	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33866803					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3035930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Rr673613	regulatory region 673613	1840 bp distal
Rr673614	regulatory region 673614	980 bp distal
Rr673615	regulatory region 673615	320 bp distal
Rr673616	regulatory region 673616	731 bp proximal
Rr673617	regulatory region 673617	1531 bp proximal
Tssr83597	transcription start site region 83597	1721 bp downstream
Tssr83598	transcription start site region 83598	193 bp downstream
Tssr83599	transcription start site region 83599	27 bp downstream
Tssr83600	transcription start site region 83600	140 bp upstream
Tssr83601	transcription start site region 83601	385 bp upstream
Tssr83602	transcription start site region 83602	426 bp upstream
Tssr83603	transcription start site region 83603	468 bp upstream
Tssr83604	transcription start site region 83604	1400 bp upstream
Tssr88025	transcription start site region 88025	8 bp upstream
Tssr88026	transcription start site region 88026	163 bp downstream
Tssr88027	transcription start site region 88027	417 bp downstream
Tssr88028	transcription start site region 88028	456 bp downstream