rs33866894 SNP Detail

Summary

• ID
  rs33866894
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72532746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TGTGTGAATA CCCGCCCCCC
  M
  CACACACACA CACAACACAA ACCTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46471605	mCV27568341	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss134205321	ENSMUSSNP2174599	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss325896483	CHEV_X_70734479	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33866894					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72532746 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	1655 bp proximal
Rr7746	regulatory region 7746	1703 bp proximal
Tssr161208	transcription start site region 161208	1623 bp upstream
Tssr161209	transcription start site region 161209	1657 bp upstream
Tssr161210	transcription start site region 161210	1680 bp upstream
Tssr161211	transcription start site region 161211	1709 bp upstream
Tssr161212	transcription start site region 161212	1764 bp upstream
Tssr161213	transcription start site region 161213	1831 bp upstream