rs33870231 SNP Detail

Summary

• ID
  rs33870231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36007475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTGCATTGC AAACACACAC TAACTGAGCA TGCCTCAGAT ACCTGAGAGA GTCGCCTTTG
  ATCCCACCCT ATCCCTGAGG CGCTGCTCGG GTGTGAGCCT GACTTCCCCA GTTCATCTCC
  CAAGTCCGCC CCACGCCGGG CGGGGCCTGG CCGGACTGCT CTAACTGCCC CCGCGAGCCC
  AGGGCACCAG CCACGAGGTG GCCGGCACGG GCCTGGGTCA GGATGGCTAC GTGGAGACGG
  GATGGCCGGT TAACCGGCAG CCAGCGGCTC CTGTGTGCGG GGCTGGCCGG GGCGTTCAGC
  Y
  TCAGCCTCAC CGCGCCCCTG GAGCTTGCCA CTGTGCTGGC CCAAGTCGGC AAGGTGCAAA
  GCCACTCCCT GGGGCTGTGG GCCACCGGAC GCCGGGTGTG GCTGTCCGAG GGGCCAAGGG
  CCCTGTGGAA AGGGAATGGC GTGGCCTGCC TGCGCCTCTT CCCCTGCAGC ATGGTACAGC
  TGGCCGCCTA CCGAAAGTAA GAGCCCGGTG GGAGGGGTCG GGAGATCGGA CTGGAATGGC
  AAAGCTGCCA CCCTGATGAA TCCTAAGAAG TCTCAGTTTC CCTTCCTCTG TAAAACCGGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46484973	mCV24429310	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33870231					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36007475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22664	CpG island 22664	within coordinates
Rr690666	regulatory region 690666	153 bp distal
Rr690667	regulatory region 690667	839 bp proximal
Slc25a43	solute carrier family 25, member 43	within coordinates
Tssr160747	transcription start site region 160747	122 bp downstream
Tssr160748	transcription start site region 160748	101 bp downstream