rs33870556 SNP Detail

Summary

• ID
  rs33870556
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:101687952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCGAGCGT GCGGGGGCGG GGCGTGGGTC CTGCAGCTGC
  GCGCTACGCC CACGGGCCAG TAGCCCGCCA CCCTCCGCCC AGAATGTGTC GCCCGAGGCG
  M
  TGTGCTCTCC CCGCCCCCCC GGGGGAGTTA TTTTCGAAAC ACTACAAGTG ACTATTTTAA
  TTTTGCACGG TTGTGCGCAC AGGCTGTTGC TCTTACTTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46487187	mCV24704494	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33870556					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:101687952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22881	CpG island 22881	within coordinates
Phka1	phosphorylase kinase alpha 1	100 bp upstream
Rr692946	regulatory region 692946	within coordinates
Tssr163920	transcription start site region 163920	169 bp upstream
Tssr163921	transcription start site region 163921	142 bp upstream
Tssr163922	transcription start site region 163922	92 bp upstream