rs33871290 SNP Detail

Summary

• ID
  rs33871290
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:52403133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTCTCCA CATCCTTGCC AGCATCTGCT GTCACCTGAA
  TCTTTGATCT TAGCCATTCT GATTGGTGTG AGGTGGAATC TCAGGGTTGT TTTGATTTGC
  W
  TTTCCCTGAT GATTAAGGTT AAGAAAACTT TGTTTGTTTT TCCATTTCTG TTATCATTCT
  TCCCATACAG TAGCTCCCCG CCCTGGAAAA GCCTGTTTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss46488561	mCV22641459	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss134173801	ENSMUSSNP4909092	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33871290					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52403133 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14585	predicted gene 14585			277 bp upstream
Pabir3	PABIR family member 3			Intron
				Noncoding-Transcript-Variant