rs33871476 SNP Detail

Summary

• ID
  rs33871476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52360441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTAGTAGG GGCTAAGGTG GGAGGATTGT GAGTTCAGGT
  CTGCTTGAGT TACATAGAAA AAAAATCTGA AACTTTCTTA AATAAAACAA CACAAACAAA
  S
  AAAGATGAAC TCTCTAACAC TGCATGCTAC TCTGAGACAA AAGGATGGAC CATCTAGAGA
  CTGCCATATC CAGGGATCCA TCCCATAATC AGCCTCCAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46489367	mCV25076676	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss134173678	ENSMUSSNP5258159	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33871476					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52360441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22720	CpG island 22720	1887 bp distal
Pabir2	PABIR family member 2	1759 bp upstream
Pabir3	PABIR family member 3	1860 bp upstream
Rr691367	regulatory region 691367	1269 bp distal
Tssr160962	transcription start site region 160962	1854 bp upstream
Tssr160963	transcription start site region 160963	1881 bp upstream
Tssr163393	transcription start site region 163393	1706 bp upstream