rs33872206 SNP Detail

Summary

• ID
  rs33872206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102522387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGAGGGGG TATAGATGGG CTATCTCAGT CTTATAGGCT
  GAGTTATGGG CACTGCATTT TAGCAATAGA AATCTATACA TTATGTGAAA TTCCATGACT
  Y
  TGGAAGTCAG TATGGAGGGG GTAGAGGGTA TAGATAGGGA TATCTCAGTC TTATAGGCTG
  AGTGATGGGC ACTGCATTTT AGCAATAGGA CCGTATGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46490837	mCV23266660	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss134259584	ENSMUSSNP4561120	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33872206					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102522387 () rs orientation: forward

Symbol	Name	Function Class
Gm26992	predicted gene, 26992	within coordinates
Rr366651	regulatory region 366651	539 bp downstream
Rr693002	regulatory region 693002	961 bp distal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr163948	transcription start site region 163948	634 bp upstream
Tssr163949	transcription start site region 163949	1729 bp downstream
Tssr163950	transcription start site region 163950	1782 bp downstream
Tssr163951	transcription start site region 163951	1912 bp downstream
Xist	inactive X specific transcripts	within coordinates