rs33873007 SNP Detail

Summary

• ID
  rs33873007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84617995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCGTCCCG GCCTCTGGCT CTCAGCCGGC CCGGGTAAGT
  ACCTGGCTGC GGGAGGTTTG CGCAGGGCCT GTCGTGGCGG CTGCGCCCGC CAGGACGCCC
  Y
  GAACGCCCCG AGGCCGAGGG GAGAGGGAGT GGCTGCGGGT TGGGGGTGGA GGGGCTTGAT
  CGCTATCAGC CCTCGCGGGA GAGGCGAGGA TGCCTTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46493000	mCV22316056	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss134235743	ENSMUSSNP1313507	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33873007					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84617995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22816	CpG island 22816	within coordinates
Rr395312	regulatory region 395312	279 bp downstream
Rr692277	regulatory region 692277	357 bp distal
Rr692278	regulatory region 692278	within coordinates
Rr692279	regulatory region 692279	1734 bp proximal
Tab3	TGF-beta activated kinase 1/MAP3K7 binding protein 3	within coordinates
Tssr161439	transcription start site region 161439	372 bp downstream
Tssr161440	transcription start site region 161440	350 bp downstream