rs33877657 SNP Detail

Summary

• ID
  rs33877657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154044515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TGGAGTCTAT GGGGTTCATT
  K
  CTCAGGACTT ATTTTCTAAG AAAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46513681	mCV22944961	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G	G
ss134512697	ENSMUSSNP4814301	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33877657					SNP	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154044515 () rs orientation: forward

Symbol	Name	Function Class
Acot9	acyl-CoA thioesterase 9	924 bp upstream
Cpgi23012	CpG island 23012	831 bp proximal
Rr8395	regulatory region 8395	485 bp proximal
Rr395811	regulatory region 395811	26 bp upstream
Tssr162420	transcription start site region 162420	928 bp upstream
Tssr162421	transcription start site region 162421	941 bp upstream
Tssr162422	transcription start site region 162422	992 bp upstream
Tssr162423	transcription start site region 162423	1012 bp upstream