rs33878046 SNP Detail

Summary

• ID
  rs33878046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99771674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA TGGATCTCAT GGAGGCATTT
  Y
  CTCAACTGAA GCTCCTTTCT CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46515827	mCV23831031	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss134256533	ENSMUSSNP470217	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33878046					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99771674 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1805 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	796 bp downstream
Rr692772	regulatory region 692772	1384 bp proximal
Rr692773	regulatory region 692773	1993 bp proximal
Tssr161618	transcription start site region 161618	1750 bp upstream
Tssr161619	transcription start site region 161619	1768 bp upstream
Tssr161620	transcription start site region 161620	1849 bp upstream
Tssr161621	transcription start site region 161621	1912 bp upstream