rs33883050 SNP Detail

Summary

• ID
  rs33883050
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:120102212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTTTTCTTT GCTGTGAAGA GGCTTATTTA ATTTGATGCA ATCTAATGTC TCAATCCTTG
  CTATTACTCC TTGAGCGGCT GGAGCAATAC TCAGGAACTC ATTGCCTGTA CCTGTGTCTT
  GACGTTTTCC CTCTATATTT TCCACTAGAA ATTTCAAACA TGATTCTCTT CTTCAGCCTA
  CTTGATACCT CGAAATCTCT CTTATGTCAA AGTCTGGAGT CGTGACTGAA ATCAAAGCAA
  GCAGTGGAGT GGTTTTTTTT TTTTTTTTTC CCCTTTCTGG AAATGCTGGC AGGACTTTGC
  M
  TATGAGAACC TCTAGGGGGC AGTGTCATCC AATAGAATCT TGACACTGCC CTCATCCACT
  CTAAACCATT CATTTTCACC ACCCAACTTC CTATGTGCCT CTTCAGTTAT TTCTGGTCTT
  TTGTATTTTG GACCATATCA AGACATCACT GGTCATAACT GCCAACATAT ACTAAAAGCT
  TAGCTGCTTA TCGCCTTTTA ATTAATCTCA CAGATCAAGT CGTCTCCAAA TGAACTAACA
  CATTTTTATA TGCGTAGTGC ATTTCAGTTT TATGAACCAG ATATAGGTCC CTGAGGCCTA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39053414	mCV22604084	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	C
ss136155524	ENSMUSSNP2932322	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33883050					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:120102212 () rs orientation: forward

Symbol	Name	Function Class
Ccl28	C-C motif chemokine ligand 28	within coordinates
Rr270687	regulatory region 270687	812 bp distal
Rr270688	regulatory region 270688	within coordinates
Rr270689	regulatory region 270689	1989 bp proximal
Rr282566	regulatory region 282566	within coordinates
Rr282567	regulatory region 282567	1589 bp proximal