rs33883349 SNP Detail

Summary

• ID
  rs33883349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:43157981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGACACACA CACACAGACA CACACACACA CACACATAAT TATGAATCAC CTACAGGCCC
  AGGCACATAC CTACACAGAC ACACAGACAC ACACACACAG ACACACACAC ACACACACAT
  AATTATGAAT CACCTACAGG CCCAGGCACA TACCTACACA GATACACAGA CACACACACA
  CACACACATA ATTATGAATC ACCTATAGGC CCAGGCACAT ACCTACACAG ATACACACAC
  ACACATAATT ATAAATCACC TATAGGCCCA GGCACATACC TACACAGATA CACAGACACA
  S
  ACACAGACAC ACAGACACAC ACACAGACAC ACACACACAC ATGCGTGCGC ATGCACGTGC
  GTGAATGAGC TGGCGCATGC ATACACAAGT GCGCACACAC ACTCACATAA TTATAAAGAA
  AATAATTTTA AAACATTAAC ATGGCCGTAG CCAACAACCA AAACACTCGA AATAGAACAC
  GGCTTCCTTA ATAAAGGCTA CCACCAAGAA CAAGAACAAA GGAAAGATGG GTCAAACATT
  CTGCGTAACA AAAGTAATTA AAGTCAGAAA GAATGCCAAA AAAAATGCTC ACCAAAAAGA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39077279	mCV22967208	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss148934444	ENSMUSSNP2274994	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33883349					SNP	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43157981 () rs orientation: forward

Symbol	Name	Function Class
Gm15809	predicted gene 15809	within coordinates
Gm61192	predicted gene, 61192	1574 bp downstream
Phactr1	phosphatase and actin regulator 1	Intron
Rr388334	regulatory region 388334	within coordinates
Rr478223	regulatory region 478223	348 bp proximal