rs33883400 SNP Detail

Summary

• ID
  rs33883400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53614719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGAG TGCACGCAGT GAGTACATGC
  R
  CACTTCTCTG TCCCCAGCCC ACATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39080953	mCV22985527	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss324342362	CHEV_13_53556052	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33883400					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53614719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	1220 bp proximal
Gm33763	predicted gene, 33763	1386 bp upstream
Rr388456	regulatory region 388456	122 bp upstream
Rr480050	regulatory region 480050	955 bp proximal
Rr480051	regulatory region 480051	1346 bp proximal
Rr480052	regulatory region 480052	1439 bp proximal