rs33883772 SNP Detail

Summary

• ID
  rs33883772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:68718731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAATAAAAT AAAACGACCT AAAATTAAAT AACAAAATGG CAATAGATAA TCATGTTCCA
  TTTAAAGTTA ACTTCAGGGG CTGGAGAGAT GGCTCAGTTA CTGAGCACGC TAGCTGCTCT
  TCTAGAGGAG CCCAGTTCCC AAGACCCACA AGCCTTTACA CTCTAGCTCC AGAGGAATCC
  ATCCAAAGTC CTTTCCTGGC CTCAACACAG CTCTCTCTCT CTCTCTCTCT CTCTCATACA
  CACACACACA CACACACACA CACACACACA CACACACACA CACACACACA CACACACACA
  Y
  ATACACACAC ACACCCCAGA CAAAATAAAA ACAACTGTTT TTGAAAAACA GGAACTTTAG
  GACTGAATAA GTTAAAGATT ATATGCAAGC AATATTAATA CTTTAAATAA TAAAGTTTCT
  TTTAAACACA GAAAAGTATT TTTATATAAT ATCAGTAGGA GAAATAAACT TGATAAGAAT
  TTTACATAAA GTCTCAGGCT CCTGTTGTGC CCATAAGTGC TCAAAACATG TAAAGCCCAT
  CACCACCCTA GTCACTGTAA GAAAGAACAG TGGCAAGAAC CCATCTGCAT AGGGCTTGCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss39113967	mCV22669361	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33883772					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:68718731 () rs orientation: forward

Symbol	Name	Function Class
Mtrr	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	within coordinates
Rr1653	regulatory region 1653	916 bp upstream
Rr388642	regulatory region 388642	1478 bp downstream
Rr482077	regulatory region 482077	811 bp distal
Tg(Tek-cre)12Flv	transgene insertion 12, Richard A Flavell	within coordinates