rs33886697 SNP Detail

Summary

• ID
  rs33886697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88746650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGGAATG AGGGAATCAA
  ATATTTCTGG CTTTGTTCTT GTACATCGGG GTGCCTACAA TTCCTCTGCA TCTCTGCCAT
  ATTCACAGCT CATCTACTTT ACTGCGAGCA GATAGCCTGC TTCAGTCATT TTATATGCAA
  AGACATTGAA TAGTCAACAT CCCCTCATCA GGAACCAAAT GAAGCTTTGT TGAGCAAGCA
  R
  ACGGGCAATG TCTCCGTTTT AGAGACCCTT TCTCTTAATC CATTTATATC TGTGTGAAAC
  AGGTATCAGT AGCATGGTTT TTAAAGAACT GGGTATAGAA ATTGAAAGGT TTAATTTCCA
  GGTTCATAAT GATAACAGTA AACTCAAACT ATAGTTTTCT TTTAGAAATT CAATGGAATA
  GTCCTCTCTC TCTCTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39519195	mCV25115691	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146190942	ENSMUSSNP1727211	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss325501546	CHEV_17_88838562	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33886697					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88746650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	970 bp proximal
Foxn2	forkhead box N2	1489 bp upstream
Rr340320	regulatory region 340320	550 bp proximal
Rr343688	regulatory region 343688	1996 bp distal
Rr343689	regulatory region 343689	850 bp distal
Rr405533	regulatory region 405533	1141 bp upstream
Tssr146228	transcription start site region 146228	1492 bp upstream
Tssr146229	transcription start site region 146229	1520 bp upstream
Tssr146230	transcription start site region 146230	1849 bp upstream