rs33886868 SNP Detail

Summary

• ID
  rs33886868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88746636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAATAATG TTGTTTGTGG
  AATGAGGGAA TCAAATATTT CTGGCTTTGT TCTTGTACAT CGGGGTGCCT ACAATTCCTC
  TGCATCTCTG CCATATTCAC AGCTCATCTA CTTTACTGCG AGCAGATAGC CTGCTTCAGT
  CATTTTATAT GCAAAGACAT TGAATAGTCA ACATCCCCTC ATCAGGAACC AAATGAAGCT
  Y
  TGTTGAGCAA GCAGACGGGC AATGTCTCCG TTTTAGAGAC CCTTTCTCTT AATCCATTTA
  TATCTGTGTG AAACAGGTAT CAGTAGCATG GTTTTTAAAG AACTGGGTAT AGAAATTGAA
  AGGTTTAATT TCCAGGTTCA TAATGATAAC AGTAAACTCA AACTATAGTT TTCTTTTAGA
  AATTCAATGG AATAGTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39529494	mCV25115681	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146190937	ENSMUSSNP6764501	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss325501545	CHEV_17_88838548	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33886868					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88746636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	984 bp proximal
Foxn2	forkhead box N2	1503 bp upstream
Rr340320	regulatory region 340320	564 bp proximal
Rr343688	regulatory region 343688	1982 bp distal
Rr343689	regulatory region 343689	836 bp distal
Rr405533	regulatory region 405533	1155 bp upstream
Tssr146228	transcription start site region 146228	1506 bp upstream
Tssr146229	transcription start site region 146229	1534 bp upstream
Tssr146230	transcription start site region 146230	1863 bp upstream