rs33887294 SNP Detail

Summary

• ID
  rs33887294
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:11189036 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  ATTGCTCTCA ATGACAACTT TGTCAAGCTC ATTTCCTGGT ATGACAATGA ATACGGCTAC
  AGCAACAGGG TGGTGGACCT CATGGCCTAC ATGGCCTCCA AGGAGTAAGA AACCCTGGAC
  CACCCACCCC AGCAAGGACA CTGAGCAAGA GAGGCCCTAT CCCAACTCGG CCCCCAACAC
  TGAGCATCTC CCTCACAATT TCCATCCCAG ACCCCCATAA TAACAGGAGG GGCCTAGGGA
  GCCCTCCCTA CTCTCTTGAA TACCATCAAT AAAGTTCGCT GCACCCACCA AAAAAAAAAA
  W
  AAATAAATAA ATAAATAAAT AAATAAATCT TTTGAAGAAG AAGAAGAAGA AGAAGAAGAA
  GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGAAAAC
  TAAGCAGAAC CTAGAATTAA TCTGACTGTC CTATTTTTTT TTCTCAAACT TATTCAGGTC
  AACAAAAGTA ATTAGTGGAG ACTTGGGAGA CGACTCAGAC CATACGGTTG TCATAGCAAC
  TTGAAGACCT GAGTTCACAC TTTCAGCACC AACATTAAAA GTCTGATGTG GCAGTAAACA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39554515	mCV24339085	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33887294					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:11189036 () rs orientation: reverse

Symbol	Name	Function Class
Gapdhrt	glyceraldehyde-3-phosphate dehydrogenase, retrotransposed	14 bp downstream
Mir5124b	microRNA 5124b	1740 bp upstream