rs33888454 SNP Detail

Summary

• ID
  rs33888454
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191712589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCGAAGGC AGGGCATCTT GCCCCATTTC CCAGACATGG
  GCAAGAGGCA TATCCCCAAG GTTCTCACAG ACCCACTGTA AAGAACATTG GGGCTCTTTA
  M
  AGTCTTGGGA CCCTCATGCA TCACCCTGGA TGGCTTTCAT TTCTTCTCTT CCCACTCTGT
  GTCACTCTCG GCAGGACCGG CAGCCTACCC ATCCTCTCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss44985147	mCV25303795	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss146512981	ENSMUSSNP4894620	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss320196705	CHEV_1_193804509	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33888454					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191712589 () rs orientation: forward

Symbol	Name	Function Class
Rd3	retinal degeneration 3	Intron
Rr426278	regulatory region 426278	1107 bp distal
Rr426279	regulatory region 426279	674 bp proximal