rs33888729 SNP Detail

Summary

• ID
  rs33888729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189792637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTGTATT CGTTACATTG TAGCCAAGCT TTCCCCAGGG
  AGTCTCTTTC TACTCAGACC ACATAGATAG GGCAACTAAC AGACTAAAGC AACCATTTTA
  Y
  TTGAGTTCAG TTTGGTGAGT GATGAATTTA TGGACATTAT TTACTAAGAT ATGGGTGGCT
  GGGGTAGGTG CATCGCTGGG AATCCCACCT CTGCTTGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss45035024	mCV23206498	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146494730	ENSMUSSNP6356915	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs33888729					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189792637 () rs orientation: forward

Symbol	Name	Function Class
Gm30446	predicted gene, 30446	within coordinates
Rr21243	regulatory region 21243	1837 bp distal
Rr21244	regulatory region 21244	37 bp distal
Rr32812	regulatory region 32812	437 bp distal
Rr32813	regulatory region 32813	165 bp proximal
Rr407118	regulatory region 407118	850 bp proximal
Tssr10700	transcription start site region 10700	1115 bp downstream