rs33889047 SNP Detail

Summary

• ID
  rs33889047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191712531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGAGGCTG TGCTCAGTAG CAGAAGAGAC CAGGAGAGAG
  AAGAGGGGAG GAGCTGTCAA CCGAAGGCAG GGCATCTTGC CCCATTTCCC AGACATGGGC
  R
  AGAGGCATAT CCCCAAGGTT CTCACAGACC CACTGTAAAG AACATTGGGG CTCTTTACAG
  TCTTGGGACC CTCATGCATC ACCCTGGATG GCTTTCATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45083186	mCV25303785	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146512978	ENSMUSSNP1080477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320196704	CHEV_1_193804451	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33889047					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191712531 () rs orientation: forward

Symbol	Name	Function Class
Rd3	retinal degeneration 3	Intron
Rr426278	regulatory region 426278	1049 bp distal
Rr426279	regulatory region 426279	732 bp proximal