rs33889177 SNP Detail

Summary

• ID
  rs33889177
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182820092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

   CACACCATA CACAGGACAT ACATAGCACA TATGTACCAC ACAGGCAGTA CACATACCAT
  ACACAACACA CAGCGCCCCC TGTAGATCAT CTGAGAGGAT AATCTTTCCC AGCCTTGAAT
  CTTCACTGAT ATCTATAGCT TAGTGCTTGC CCTCCCTGGG AAACACTGGG CCCAGGAAAC
  GGCTACAGTT CATGTCCCAG CTGACCTGAC GCACAGGATC TGTAGCCTTA GGTGGACAAT
  ACATCTGGAG GCAGAGAACT TAGAATATAC CAGAAAGTCT CATAAATCCT TTGCCAATTT
  W
  GCAAAGAGTC CTGTGGCAAC CAAAAGTAAA GCTGGCCATG TAAGGGTGGC ACAAAGGAAA
  AGGTCACCCC CGAGCAGCCT TGAATTACAA CACTCACAAA CTAAACGCCC TCGTTTGACC
  TTGACCCTGG TTGATATTGA GAGTCTTCTC TTCCCATATT CTCAGGGGCC CATGCAAGCA
  GGAGCAGCTC TTGCCTGAAC TCCTGTTCCA TCCCTCCTGG CCTGACAACC TCTGCAGCAA
  GCCAGAAGCA GAAGCCAGTC CAGCCCTGAG AGCCCAGGGG GGCCAGAAAC ACCCGAGATT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45105567	mCV23015130	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss136165860	ENSMUSSNP5363832	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33889177					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182820092 () rs orientation: forward

Symbol	Name	Function Class
Rr425028	regulatory region 425028	697 bp distal
Rr425029	regulatory region 425029	1299 bp distal
Rr425030	regulatory region 425030	209 bp distal