rs33889258 SNP Detail

Summary

• ID
  rs33889258
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182820088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

       CACAC CATACACAGG ACATACATAG CACATATGTA CCACACAGGC AGTACACATA
  CCATACACAA CACACAGCGC CCCCTGTAGA TCATCTGAGA GGATAATCTT TCCCAGCCTT
  GAATCTTCAC TGATATCTAT AGCTTAGTGC TTGCCCTCCC TGGGAAACAC TGGGCCCAGG
  AAACGGCTAC AGTTCATGTC CCAGCTGACC TGACGCACAG GATCTGTAGC CTTAGGTGGA
  CAATACATCT GGAGGCAGAG AACTTAGAAT ATACCAGAAA GTCTCATAAA TCCTTTGCCA
  W
  TTTAGCAAAG AGTCCTGTGG CAACCAAAAG TAAAGCTGGC CATGTAAGGG TGGCACAAAG
  GAAAAGGTCA CCCCCGAGCA GCCTTGAATT ACAACACTCA CAAACTAAAC GCCCTCGTTT
  GACCTTGACC CTGGTTGATA TTGAGAGTCT TCTCTTCCCA TATTCTCAGG GGCCCATGCA
  AGCAGGAGCA GCTCTTGCCT GAACTCCTGT TCCATCCCTC CTGGCCTGAC AACCTCTGCA
  GCAAGCCAGA AGCAGAAGCC AGTCCAGCCC TGAGAGCCCA GGGGGGCCAG AAACACCCGA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45116167	mCV23015120	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss136165857	ENSMUSSNP2007530	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33889258					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182820088 () rs orientation: forward

Symbol	Name	Function Class
Rr425028	regulatory region 425028	693 bp distal
Rr425029	regulatory region 425029	1295 bp distal
Rr425030	regulatory region 425030	205 bp distal