rs33889376 SNP Detail

Summary

• ID
  rs33889376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182820002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACACCATA CACAGGACAT ACATAGCACA
  TATGTACCAC ACAGGCAGTA CACATACCAT ACACAACACA CAGCGCCCCC TGTAGATCAT
  CTGAGAGGAT AATCTTTCCC AGCCTTGAAT CTTCACTGAT ATCTATAGCT TAGTGCTTGC
  CCTCCCTGGG AAACACTGGG CCCAGGAAAC GGCTACAGTT CATGTCCCAG CTGACCTGAC
  R
  CACAGGATCT GTAGCCTTAG GTGGACAATA CATCTGGAGG CAGAGAACTT AGAATATACC
  AGAAAGTCTC ATAAATCCTT TGCCAATTTA GCAAAGAGTC CTGTGGCAAC CAAAAGTAAA
  GCTGGCCATG TAAGGGTGGC ACAAAGGAAA AGGTCACCCC CGAGCAGCCT TGAATTACAA
  CACTCACAAA CTAAACGCCC TCGTTTGACC TTGACCCTGG TTGATATTGA GAGTCTTCTC
  TTCCCATATT CTCAGGGGCC CATGCAAGCA GGAGCAGCTC TTGCCTGAAC TCCTGTTCCA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45134318	mCV23015119	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss136165854	ENSMUSSNP1738352	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33889376					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182820002 () rs orientation: forward

Symbol	Name	Function Class
Rr425028	regulatory region 425028	607 bp distal
Rr425029	regulatory region 425029	1209 bp distal
Rr425030	regulatory region 425030	119 bp distal