rs33889473 SNP Detail

Summary

• ID
  rs33889473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172526856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAGGGTGAT GTGTTTATTA AGCCGCAGCT GTGGTCCTGA CCTACTGTTG TGAACCCTGA
  AGCACCTCCT GGGATTACAT TCTCTCCCTT GTCTCGGGTT ATGAACCTTT TAGCCCCAGC
  AGATGTTGTA GGTCTGTTCT GTGAATATGG CCTTTCACTT CTCTGCTTTG TGGTCCTCAG
  CACTAGAGCA CGGAATTTAA ATGGAAGGCT TCCAGCATAA GCATCCCACT AGGACTCTAC
  CAAAGAGAAT CTGACTTACC CATGGTTTTA TATATATATG TAAATATCCA TATATATATA
  Y
  ATATATACAT ATATATATAT ACATACATAT ATATATATAT ATATAATTGA AAAAATTTCA
  GACATAATTC TTCTCCCTCA CATAGATGAG AAAATAGATG CACAGAAAGG AGAATAATTT
  TTTATTGTTT TTGTTTTATA ATGTCATCTT GAGTGCTGTA TTTACATACT TTCTATCCCT
  CCCTCTTCAG ATCCTTTCCT ATCCTTCCAA ATTCTCTCTC AAATTCATGA TGTCTTATTA
  TTAGTCTTAT GCATATATAC ATATGCATAA TACCTATCAT CTATCAATCA ATCTATCTAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45149858	mCV24591825	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33889473					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172526856 () rs orientation: forward

Symbol	Name	Function Class
Crp	C-reactive protein, pentraxin-related	within coordinates
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149	within coordinates
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1	52 bp distal
Rr423653	regulatory region 423653	1517 bp distal
Rr423654	regulatory region 423654	1224 bp distal
Tssr10246	transcription start site region 10246	1226 bp downstream
Tssr10247	transcription start site region 10247	278 bp downstream
Tssr10248	transcription start site region 10248	223 bp downstream
Tssr10249	transcription start site region 10249	195 bp downstream
Tssr10250	transcription start site region 10250	143 bp downstream
Tssr10251	transcription start site region 10251	89 bp downstream
Tssr10252	transcription start site region 10252	28 bp downstream
Tssr10253	transcription start site region 10253	16 bp upstream
Tssr10254	transcription start site region 10254	81 bp upstream