rs33889521 SNP Detail

Summary

• ID
  rs33889521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC GTAGGGACAG TGGATGAGGA
  Y
  GACGGTGATT GAAAATTGGG CACCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45156579	mCV22875312	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33889521					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	608 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1274 bp downstream
Tssr8032	transcription start site region 8032	1144 bp downstream
Tssr8033	transcription start site region 8033	816 bp downstream
Tssr8034	transcription start site region 8034	804 bp downstream
Tssr8035	transcription start site region 8035	786 bp downstream
Tssr8036	transcription start site region 8036	774 bp downstream
Tssr8037	transcription start site region 8037	344 bp downstream
Tssr12924	transcription start site region 12924	1508 bp upstream
Tssr12925	transcription start site region 12925	1490 bp upstream
Tssr12926	transcription start site region 12926	1464 bp upstream
Tssr12927	transcription start site region 12927	1438 bp upstream
Tssr12928	transcription start site region 12928	1288 bp upstream
Tssr12929	transcription start site region 12929	486 bp upstream