rs33889577 SNP Detail

Summary

• ID
  rs33889577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182820143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACATACCATA CACAACACAC AGCGCCCCCT GTAGATCATC TGAGAGGATA ATCTTTCCCA
  GCCTTGAATC TTCACTGATA TCTATAGCTT AGTGCTTGCC CTCCCTGGGA AACACTGGGC
  CCAGGAAACG GCTACAGTTC ATGTCCCAGC TGACCTGACG CACAGGATCT GTAGCCTTAG
  GTGGACAATA CATCTGGAGG CAGAGAACTT AGAATATACC AGAAAGTCTC ATAAATCCTT
  TGCCAATTTA GCAAAGAGTC CTGTGGCAAC CAAAAGTAAA GCTGGCCATG TAAGGGTGGC
  R
  CAAAGGAAAA GGTCACCCCC GAGCAGCCTT GAATTACAAC ACTCACAAAC TAAACGCCCT
  CGTTTGACCT TGACCCTGGT TGATATTGAG AGTCTTCTCT TCCCATATTC TCAGGGGCCC
  ATGCAAGCAG GAGCAGCTCT TGCCTGAACT CCTGTTCCAT CCCTCCTGGC CTGACAACCT
  CTGCAGCAAG CCAGAAGCAG AAGCCAGTCC AGCCCTGAGA GCCCAGGGGG GCCAGAAACA
  CCCGAGATTT GACTAAACCA CCAACTGGAA AATCCCATTA GAATGCTTCA GCCTCTCAGC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45166196	mCV23015131	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss136165863	ENSMUSSNP7071483	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33889577					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182820143 () rs orientation: forward

Symbol	Name	Function Class
Rr425028	regulatory region 425028	748 bp distal
Rr425029	regulatory region 425029	1350 bp distal
Rr425030	regulatory region 425030	260 bp distal