rs33889675 SNP Detail

Summary

• ID
  rs33889675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178163830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAG AGCTGTTACT GATTATTTTT
  Y
  TCTGACTGAT TCTTTGACTT TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45181543	mCV22887832	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs33889675					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178163830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	64 bp proximal
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	797 bp upstream
Tssr316	transcription start site region 316	804 bp downstream
Tssr317	transcription start site region 317	1322 bp downstream
Tssr318	transcription start site region 318	1539 bp downstream
Tssr10384	transcription start site region 10384	342 bp downstream
Tssr10385	transcription start site region 10385	128 bp downstream
Tssr10386	transcription start site region 10386	51 bp downstream
Tssr10387	transcription start site region 10387	817 bp upstream
Tssr10388	transcription start site region 10388	1027 bp upstream
Tssr10389	transcription start site region 10389	1605 bp upstream
Tssr10390	transcription start site region 10390	1706 bp upstream
Tssr10391	transcription start site region 10391	1929 bp upstream
Tssr15480	transcription start site region 15480	1700 bp upstream
Tssr15481	transcription start site region 15481	172 bp upstream
Tssr15482	transcription start site region 15482	101 bp upstream
Tssr15483	transcription start site region 15483	132 bp downstream
Tssr15484	transcription start site region 15484	835 bp downstream
Tssr15485	transcription start site region 15485	894 bp downstream
Tssr15486	transcription start site region 15486	975 bp downstream
Tssr15487	transcription start site region 15487	1026 bp downstream
Tssr15488	transcription start site region 15488	1383 bp downstream
Tssr15489	transcription start site region 15489	1408 bp downstream
Tssr15490	transcription start site region 15490	1441 bp downstream
Tssr15491	transcription start site region 15491	1475 bp downstream
Tssr15492	transcription start site region 15492	1509 bp downstream