rs33889843 SNP Detail

Summary

• ID
  rs33889843
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118712797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAG CACCTTAGCA ACCCCACACC
  M
  GTCCCATCTT AAGAGGGGGT TCATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45212377	mCV22801890	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss320472441	CHEV_2_118708052	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33889843					SNP	C	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118712797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	958 bp proximal
Ivd	isovaleryl coenzyme A dehydrogenase	within coordinates
Rr397218	regulatory region 397218	546 bp upstream
Rr397219	regulatory region 397219	1220 bp upstream