rs33890055 SNP Detail

Summary

• ID
  rs33890055
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91069144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA CCCTGGGAAA ACAAAACAAA
  K
  AAATAAGTAA ACCCAGCAGT GGTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45263659	mCV24870351	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss146923717	ENSMUSSNP698851	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss320392012	CHEV_2_91078956	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33890055					SNP	G	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91069144 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	442 bp downstream
Cpgi11902	CpG island 11902	1467 bp distal
Ddb2	damage specific DNA binding protein 2	1817 bp upstream
Rr397126	regulatory region 397126	1527 bp downstream
Rr560676	regulatory region 560676	1654 bp distal
Rr560677	regulatory region 560677	755 bp distal
Rr560678	regulatory region 560678	1501 bp distal
Rr560679	regulatory region 560679	1184 bp distal
Rr560680	regulatory region 560680	798 bp distal
Tssr18884	transcription start site region 18884	1654 bp downstream
Tssr18885	transcription start site region 18885	1615 bp downstream
Tssr25176	transcription start site region 25176	1944 bp upstream
Tssr25177	transcription start site region 25177	1927 bp upstream
Tssr25178	transcription start site region 25178	1878 bp upstream
Tssr25179	transcription start site region 25179	1834 bp upstream
Tssr25180	transcription start site region 25180	1810 bp upstream