rs33890645 SNP Detail

Summary

• ID
  rs33890645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90446410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCAGACCA AGGAAAGAGG TGGGGACCAG ACTTGGGGGC
  GGGAGGGTGG GGCTGGAGTG GCTGAGATCC AGGGGCATGG TCAGGGCAAT TTGGGCTTTT
  R
  GAAAAGTCAG CAAGCCAGGA TCAGGTGGGC GGGGGTAGGG GGTGGAGTGG GGGAGAGCCT
  CCTGGTTGCT CAATGATGAA TCAGTCCAGG AGACTATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45403007	mCV24985697	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss135476818	ENSMUSSNP6807515	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320837958	CHEV_3_90343025	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs33890645					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90446410 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580396	regulatory region 580396			1778 bp distal
Rr580397	regulatory region 580397			850 bp distal
Rr580398	regulatory region 580398			1744 bp proximal
S100a16	S100 calcium binding protein A16			Intron
				Noncoding-Transcript-Variant
Tssr30217	transcription start site region 30217			1862 bp downstream
Tssr30218	transcription start site region 30218			1833 bp downstream
Tssr30219	transcription start site region 30219			1799 bp downstream
Tssr30220	transcription start site region 30220			1777 bp downstream
Tssr30221	transcription start site region 30221			1717 bp downstream
Tssr30222	transcription start site region 30222			542 bp upstream
Tssr30223	transcription start site region 30223			572 bp upstream