rs33890669 SNP Detail

Summary

• ID
  rs33890669
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90446935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATAATGAC ACCTGACTGC CCCACTCTGA TACTCTGTCT
  TCAGAAAACA CTTCAGAAAC ACACTTGTCC AGATGGTTAT CTCAGAGCTG TCCATTTTAT
  W
  AAAAGAACCT GGGGAGGAGG CAGATCCCTG GGAGGAGAGC CTGGGAAAGA GTCAGACCAC
  TACGGCTGCA TCTCTGGTCG GCCCGGTGCT CCTGGGATA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss45409178	mCV24985696	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss135476821	ENSMUSSNP928349	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320837959	CHEV_3_90343550	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs33890669					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90446935 () rs orientation: forward

Symbol	Name	Function Class
Rr580397	regulatory region 580397	1375 bp distal
Rr580398	regulatory region 580398	1219 bp proximal
Rr580399	regulatory region 580399	1544 bp proximal
S100a16	S100 calcium binding protein A16	within coordinates
Tssr30222	transcription start site region 30222	17 bp upstream
Tssr30223	transcription start site region 30223	47 bp upstream
Tssr30224	transcription start site region 30224	1527 bp upstream
Tssr30225	transcription start site region 30225	1549 bp upstream
Tssr30226	transcription start site region 30226	1561 bp upstream
Tssr30227	transcription start site region 30227	1589 bp upstream
Tssr30228	transcription start site region 30228	1630 bp upstream