rs33890726 SNP Detail

Summary

• ID
  rs33890726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCGAATCTCT CAGTTGCTAA ACCTCACCCT TGTGAACGGA TCCAGCAAGT GTTCTTGTCT
  CTTGAAGATA CACTAACATG GATGGGTTCC TTTGGAAGAC ATCCCTGGTG CTCTAGTGAC
  AGCACAGGCC GTGTGTTTCC TCCTACTCCG TATTTTCTAT CTCTGCTGTG AGGACTTACA
  GCCAGTGGGT GGCGCTGTAA TACCGGAGGA CTCATTTGTT CTGTTGCCAC TAAGTGTTTT
  TATTATGGGA CTATTTCCTT ACATCATATG CTCTGAATTC TCTCTCTCTC TCTCTCTCTC
  Y
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCCCTCCCT CCCTCCCTAT CTATATATCT
  ATCTCTCTCT CTCTCTTTTT ATATATATAG ATAGAGA                         
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45420438	mCV24793251	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33890726					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698133 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			1639 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			within coordinates
Rr583801	regulatory region 583801			343 bp distal
Rr583802	regulatory region 583802			102 bp distal
Rr583803	regulatory region 583803			1484 bp proximal
Tssr31391	transcription start site region 31391			878 bp downstream
Tssr31392	transcription start site region 31392			796 bp downstream
Tssr31393	transcription start site region 31393			769 bp downstream
Tssr31394	transcription start site region 31394			732 bp downstream
Tssr31395	transcription start site region 31395			86 bp downstream
Tssr31396	transcription start site region 31396			1889 bp upstream