rs33891288 SNP Detail

Summary

• ID
  rs33891288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCTCAGTTG CTAAACCTCA CCCTTGTGAA CGGATCCAGC AAGTGTTCTT GTCTCTTGAA
  GATACACTAA CATGGATGGG TTCCTTTGGA AGACATCCCT GGTGCTCTAG TGACAGCACA
  GGCCGTGTGT TTCCTCCTAC TCCGTATTTT CTATCTCTGC TGTGAGGACT TACAGCCAGT
  GGGTGGCGCT GTAATACCGG AGGACTCATT TGTTCTGTTG CCACTAAGTG TTTTTATTAT
  GGGACTATTT CCTTACATCA TATGCTCTGA ATTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  Y
  CTCTCTCTCT CTCTCTCTCT CTCTCTCCCT CCCTCCCTCC CTATCTATAT ATCTATCTCT
  CTCTCTCTCT TTTTATATAT ATAGATAGAG A                               
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45547061	mCV24793252	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33891288					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			1633 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			within coordinates
Rr583801	regulatory region 583801			349 bp distal
Rr583802	regulatory region 583802			108 bp distal
Rr583803	regulatory region 583803			1478 bp proximal
Tssr31391	transcription start site region 31391			884 bp downstream
Tssr31392	transcription start site region 31392			802 bp downstream
Tssr31393	transcription start site region 31393			775 bp downstream
Tssr31394	transcription start site region 31394			738 bp downstream
Tssr31395	transcription start site region 31395			92 bp downstream
Tssr31396	transcription start site region 31396			1883 bp upstream