rs33891399 SNP Detail

Summary

• ID
  rs33891399
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3688298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCACTAGAC CTTGTCCTAG AATCTGTAAT AAGCCTTGAC AGGAGAGTCC CTGACTAAAA
  ATGATGGCTT TTTAAAAAGG AAAGGAGAAC TTTTAGTAAG GAACAGCCCC TTTCAGTTAA
  AGGCAGCATC CTGACACTCT TTTTAAAGCA TCTATCTATC TATCTATCTA TCTATCTATC
  TATCTATCTA TCTATCTATC TACCTACCTA CCTACTTATC ATCAATTTAT TATCTATCTA
  TCTATCTATC TATCTATCTA TCTATCTATC TACCTACCTA CCTATCATCA ATTTATTATC
  H
  ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAC CTATCTACCT
  ACCTACCTAC TTATCATCAA TTTATTATCT ATCTATCTGT CTGTCTGTCT GTCTGTCTGT
  CTGTCTGTCT GTCTGTCTGT CTAGGTTTCT CAACAGGGTT TCACTGTGTA GCTCTGGCTA
  TCTTGGAACT AACTCTGCAG ACCAGGGTGG CCTTAAACTC AAAGAAATCC ATCTGTCCTG
  TCTCTACCTC CTGAATTCTG GGGATTAAAA GCATGTCCCA CCACTGGCTG TAAGAAGATA
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45570251	mCV23809094	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss45665895	mCV23809093	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33891399					SNP	?	?	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3688298 () rs orientation: forward

Symbol	Name	Function Class
Lyn	LYN proto-oncogene, Src family tyrosine kinase	within coordinates
Rr104512	regulatory region 104512	1539 bp proximal
Tssr36344	transcription start site region 36344	370 bp downstream