rs33891925 SNP Detail

Summary

• ID
  rs33891925
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156312729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCCCGAG CCAACCACTC CAGCCGGACA CGCCCCTCCG
  CTCACCGTCC CAGGGATGTA GTGGAAGATC CTGTTAGCCG CGGTGTCCCC ATCAGGCCTA
  S
  CCTCGGTGCC AAACAAGCCA GCCAGCTTCC TGGCGCTGTC TTCTCTGGGA ACAAGGGAAA
  CCGAAGGCTC AAGGCCTGGT CCAGGCAGCA GGTCCAGGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45661650	mCV23474471	ABI	CRAMUS_MOUSE	f	SNP	G	C	C					G
ss46789983	NES10982297	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G	C		G	C	G	G		G	G	G	G
ss148128842	ENSMUSSNP6092360	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321446050	CHEV_4_155602381	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33891925					SNP	G	C	C	G	C	G	C	G	G	C	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789983	NES10982297	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156312729 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1063 bp downstream
Mir7658	microRNA 7658	1787 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	245 bp proximal
Rr606704	regulatory region 606704	280 bp proximal
Tssr45022	transcription start site region 45022	232 bp downstream
Tssr45023	transcription start site region 45023	268 bp downstream
Tssr45024	transcription start site region 45024	523 bp downstream