rs33892417 SNP Detail

Summary

• ID
  rs33892417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134682506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG CTGAGGATGA CCTTGAACTC
  Y
  TCTTCTGCCA CCTCCTGTGC ATCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45740212	mCV27572508	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss144508942	ENSMUSSNP5089849	ENSEMBL	ENSEMBL_Sanger	f	SNP			T	C
ss321696374	CHEV_5_135129522	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33892417					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134682506 () rs orientation: forward

Symbol	Name	Function Class
Rr622116	regulatory region 622116	1130 bp distal
Rr622117	regulatory region 622117	742 bp proximal
Rr622118	regulatory region 622118	1207 bp proximal