rs33892768 SNP Detail

Summary

• ID
  rs33892768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134681732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA TACACAGGGA CAGGGATGGT
  R
  CATCATTGGA CCACATCCTG GGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45780300	mCV27572509	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss60845247	NES16004336	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A		G	A	G	A		G	A	A	G		G
ss321696373	CHEV_5_135128748	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33892768					SNP	A	A	G	G	A	A	A	A	G	A	G	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60845247	NES16004336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134681732 () rs orientation: forward

Symbol	Name	Function Class
Rr622113	regulatory region 622113	1647 bp distal
Rr622114	regulatory region 622114	1736 bp distal
Rr622115	regulatory region 622115	1549 bp distal
Rr622116	regulatory region 622116	356 bp distal
Rr622117	regulatory region 622117	1516 bp proximal
Rr622118	regulatory region 622118	1981 bp proximal